Publications

HighPrep PCR

Single-cell polyadenylation site mapping reveals 3′ isoform choice variability
Lars Velten, Simon Anders, Aleksandra Pekowska, Aino I Järvelin, Wolfgang Huber, Vicent Pelechano and Lars M Steinmetz
 
RNA-seq Analysis of Irrigated vs. Water Stressed Transcriptomes of Zea mays Cultivar Z59
B. Divya Bhanu, Kandasamy Ulaganathan, Arun K. Shanker and S. Desai
 
Nucleotide pools dictate the identity and frequency of ribonucleotide incorporation in mitochondrial DNA
Anna-Karin Berglund ,Clara Navarrete ,Martin K. M. Engqvist, Emily Hoberg, Zsolt Szilagyi, Robert W. Taylor, Claes, M. Gustafsson, Maria Falkenberg, Anders R. Clausen 
 
CleanTag small RNA library kit with no Gel Purification
Mark Livingstone
 
Real-time, portable genome sequencing for Ebola surveillance
Joshua Quick
 
RNA-Seq analysis of urea nutrition responsive transcriptome of Oryza sativa elite indica cultivar RP Bio 226
Mettu Madhavi Reddy, Kandasamy Ulaganathan
 
Taxonomic description and genome sequence of Bacillus campisalis sp. nov., a member of the genus Bacillus isolated from a solar saltern 
Rajendran Mathan Kumar,Gurwinder Kaur, Anand Kumar, Monu Bala, Nitin Kumar Singh, Navjot Kaur, Narender Kumar and Shanmugam Mayilraj
 
Genome Mining and Comparative Genomic Analysis of Five Coagulase- Negative Staphylococci (CNS) Isolated from Human Colon and Gall Bladder
Ramesan Girish Nair, Gurwinder Kaur, Indu Khatri, Nitin Kumar Singh, Sudeep Kumar Maurya, Srikrishna Subramanian, Arunanshu Behera, Divya Dahiya, Javed N Agrewala and Shanmugam Mayilraj 
 
Draft genome sequence of Oryza sativa elite indica cultivar RP Bio-226
Mettu M. Reddy and Kandasamy Ulaganathan
 
Having older siblings is associated with gut microbiota development during early childhood
Martin Frederik Laursen, Gitte Zachariassen, Martin Iain Bahl, Anders Bergström, Arne Høst, Kim F. Michaelsen and Tine Rask Licht
 
Infant Gut Microbiota Development Is Driven by Transition to Family Foods Independent of Maternal Obesity
Martin Frederik Laursen, Louise B. B. Andersen, Kim F. Michaelsen, Christian Mølgaard, Ellen Trolle, Martin Iain Bahl, Tine Rask Licht
 
Unbiased Identification of Blood-based Biomarkers for Pulmonary Tuberculosis by Modeling and Mining Molecular Interaction Networks 
Awanti Sambarey, Abhinandan Devaprasad, Abhilash Mohan, Asma Ahmed, Soumya Nayak, Soumya Swaminathan, George D’Souza, Anto Jesuraj, Chirag Dhar, Subash Babu, Annapurna Vykarnam, Nagasuma Chandra
 
Knock-In of a 25-Kilobase Pair BAC-Derived Donor Molecule 9 by Traditional and CRISPR/Cas9-Stimulated Homologous Recombination
Tiffany Leidy-Davis , Kai Cheng, Leslie O. Goodwin, Judith L. Morgan, Wen Chun Juan, Xavier Roca, Sin-Tiong Ong, David E. Bergstrom
 
Phosphopantothenoylcysteine Synthetase from Escherichia coli 
Erick Strauss, Cynthia Kinsland, Ying Ge, Fred W. McLafferty, and Tadhg P. Begley
 
Microbial diversity and community respiration in freshwater sediments influenced by artificial light at night
Franz Hölker, Christian Wurzbacher, Carsten Weißenborn, Michael T. Monaghan, Stephanie I. J. Holzhauer, Katrin Premke
 
Novel Molecular Findings in Protein Tyrosine Phosphatase Receptor Gamma (PTPRG) Among Chronic Myelocytic Leukemia (CML) Patients Studied By Next Generation Sequencing (NGS): A Pilot Study in Patients from the State of Qatar and Italy
Maria Monne, Mohammed Araby, Ali Sayab, Marzia Vezzalini, Luisa Tomasello, Helmout Modjtahedi. 
 
Molecular and Biochemical Characterization of AtPAP15, a Purple Acid Phosphatase with Phytase Activity, in Arabidopsis 
Ruibin Kuang, Kam-Ho Chan, Edward Yeung and Boon Leong Lim
 
Effect of humic acid on anaerobic digestion of cellulose and xylan in completely stirred tank reactors: inhibitory effect, mitigation of the inhibition and the dynamics of the microbial communities. 
Samet Azman & Ahmad F. Khadem & Caroline M. Plugge & Alfons J. M. Stams
 
Bacterial Community Profiling of Plastic Litter in the Belgian Part of the North Sea Caroline
De Tender, Lisa I. Devriese, Annelies Haegeman, Sara Maes, Tom Ruttink, and Peter Dawyndt
 
Taxonomic description and genome sequence of Salinicoccus sediminis sp. nov., a halotolerant bacterium isolated from marine sediment
Rajendran Mathan Kumar,  Gurwinder Kaur,  Narender Kumar,  Anand Kumar, Nitin Kumar Singh,  Monu Bala,  Navjot Kaur, Shanmugam Mayilraj 
 
The role of the intestinal microbiota in pneumonia and sepsis
Lankelma, J.M.
 
Taxonomic description and genome sequence of Salinicoccus sediminis sp. nov., a halotolerant bacterium isolated from marine sediment
Rajendran Mathan Kumar, Gurwinder Kaur, Narender Kumar, Anand Kumar, Nitin Kumar Singh, Monu Bala, Navjot Kaur and Shanmugam Mayilraj.
 
Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation 
Anders R Clausen, Scott A Lujan, Adam B Burkholder, Clinton D Orebaugh, Jessica S Williams, Maryam F Clausen, Ewa P Malc, Piotr A Mieczkowski, David C Fargo, Duncan J Smith & Thomas A Kunkel
 
Metagenomic analysis of microbial community of an Amazonian geothermal spring in Peru
Sujay Paul, Yolanda Cortez, Nadia Vera, Gretty K. Villena, Marcel Gutiérrez-Correa
 
High throughput de novo RNA sequencing elucidates novel responses in Penicillium chrysogenum
Yesupatham Sathishkumar, Chandran Krishnaraj, Kalyanaraman Rajagopa, Dwaipayan Sen and Yang Soo Lee
 
Growth and activity of ANME clades with different sulfate and sulfide concentrations in the presence of methane
Peer H. A. Timmers, H. C. A. Widjaja-Greefkes, Javier Ramiro-Garcia, Caroline M. Plugge and Alfons J. M. Stams
 
Tryptophan restriction arrests B cell development and enhances microbial diversity in WT and prematurely aging Ercc12/D7 mice
Adriaan A. van Beek, Floor Hugenholtz, Ben Meijer, Bruno Sovran, Olaf Perdijk, Wilbert P. Vermeij, Renata M. C. Brandt, Sander Barnhoorn, Jan H. J. Hoeijmakers, Paul de Vos, Pieter J. M. Leenen, Rudi W. Hendriks and Huub F. J. Savelkoul.
 
Infant Gut Microbiota Development Is Driven by Transition to Family Foods Independent of Maternal Obesity
Martin Frederik Laursen, Louise B. B. Andersen, Kim F. Michaelsen, Christian Mølgaard, Ellen Trolle, Martin Iain Bahl, Tine Rask Licht
 
Supraglacial bacterial community structures vary across the Greenland ice sheet
Karen A. Cameron, Marek Stibal, Jakub D. Zarsky, Erkin Gozdereliler, Morten Schostag and Carsten S. Jacobsen
 
ERG signaling in prostate cancer is driven through PRMT5- dependent methylation of the Androgen Receptor 
Mounir, Z., J. M. Korn, T. Westerling, F. Lin, C. A. Kirby, M. Schirle, G. McAllister
 
2 1-fructans modulate the immune system in vivo by direct interaction with the mucosa in a microbiota-independent fashion
Fransen, Floris; Sahasrabudhe, Neha; Elderman, Marlies; Bosveld, Margaret; El Aidy, Sahar Farouk Abdelsalam; Hugenholtz, Floor; Borghuis, Theo; Kousemaker, Ben; Winkel, Simon; van der Gaast-de Jongh
 
Benzene degradation in a denitrifying biofilm reactor: activity and microbial community composition
Marcelle J. van der Waals, Siavash Atashgahi, Ulisses Nunes da Rocha, Bas M. van der Zaan, Hauke Smidt, Jan Gerritse
 
Taxonomic description and genome sequence of Salinicoccus sediminis sp. nov., a halotolerant bacterium isolated from marine sediment
Rajendran Mathan Kumar,  Gurwinder Kaur,  Narender Kumar,  Anand Kumar,  Nitin Kumar Singh,  Monu Bala,  Navjot Kaur, Shanmugam Mayilraj

 


HighPrep DTR

An economical and efficient method of post reaction cleanup of labeled dye terminator sequencing products
Rajesh R Kundapur, Vijay Nema

Knock-In of a 25-Kilobase Pair BAC-Derived Donor Molecule 9 by Traditional and CRISPR/Cas9-Stimulated Homologous Recombination
Tiffany Leidy-Davis , Kai Cheng, Leslie O. Goodwin, Judith L. Morgan, Wen Chun Juan, Xavier Roca, Sin-Tiong Ong , David E. Bergstrom
 
Nuclear introgression without mitochondrial introgression in two turtle species exhibiting sex-specific trophic differentiation
Sarah M. Mitchell,nLaura K. Muehlbauer, Steven Freedberg
 
A European epidemiological survey of Vibrio splendidus clade shows unexplored diversity and massive exchange of virulence factors.
Nasfi H, Travers MA, de Lorgeril J, Habib C, Sannie T, Sorieul L, Gerard J, Avarre JC, Haffner P, Tourbiez D, Renault T, Furones D, Roque A, Pruzzo C, Cheslett D, Gdoura R, Vallaeys T.